Recombination accelerates adaptation on a large-scale empirical fitness landscape in HIV-1
byDanesh Moradigaravand, Roger Kouyos, Trevor Hinkley, Mojgan Haddad,
Christos J Petropoulos, Jan Engelstädter, Sebastian Bonhoeffer
Research ArticleYear:2014
Extra Information
PLoS genetics, 10(6) e1004439
Abstract
Recombination has the potential to facilitate adaptation. In spite of
the substantial body of theory on the impact of recombination on the
evolutionary dynamics of adapting populations, empirical evidence to
test these theories is still scarce. We examined the effect of
recombination on adaptation on a large-scale empirical fitness landscape
in HIV-1 based on in vitro fitness measurements. Our results
indicate that recombination substantially increases the rate of
adaptation under a wide range of parameter values for population size,
mutation rate and recombination rate. The accelerating effect of
recombination is stronger for intermediate mutation rates but increases
in a monotonic way with the recombination rates and population sizes
that we examined. We also found that both fitness effects of individual
mutations and epistatic fitness interactions cause recombination to
accelerate adaptation. The estimated epistasis in the adapting
populations is significantly negative. Our results highlight the
importance of recombination in the evolution of HIV-I.